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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2213330_2213643_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2213330 - 2213643
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGTTTTAATC
Flanking Amino Acid:
QNVCSACWNKGITALILLKT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
65.3
0.46
1.3
69.9
36.2

Associated Gene:

Gene:
CFAP52
Ensembl Gene ID:
ENSAPLG00000009477
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009879
2213273 - 2222063
8791