Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2214614_2216571_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2214614 - 2216571

Intron Length:

1958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

CTGAATTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TCTCTCTGAATT

Flanking Amino Acid:

NEAVNDIVFPVGTSDLFATC

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

76.1

34.8

Major BPS

69.8

0.49

37.5

Major PPT

67.4

0.39

57.9

42.8

Minor 5ss

35.9

-1.6

2.9

43.1

43.9

Minor BPS

64.5

0.53

1.4

77.82

38.8

Associated Gene:

Gene:

CFAP52

Ensembl Gene ID:

ENSAPLG00000009477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030910

2205466 - 2222063

16598

ENSAPLT00000009879

2213273 - 2222063

8791