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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2247407_2248330_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2247407 - 2248330
Intron Length:
924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATCACTGGATT
Flanking Amino Acid:
VFSASFDLSIRCWDIFSGAC
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70.1
0.45
0.9
65
36.3
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
48.5
-0
1.7
65.9
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007847
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008149
2244394 - 2254012
9619