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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2249127_2249763_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2249127 - 2249763
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
CTTTCTTTTACT
Flanking Amino Acid:
WLAETGALVKILEGHQGPVK
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
83.5
0.75
0.7
81.4
29.3
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
73.6
0.82
1.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007847
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008149
2244394 - 2254012
9619