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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2258091_2258851_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2258091 - 2258851
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAATT
Flanking Amino Acid:
LLSCDFWAVKNVTGRLMVGL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
39.2
-1.2
3
51.6
45.1
Minor BPS
69.6
0.69
1.6
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007701
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008005
2257438 - 2261558
4121