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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2258942_2260219_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2258942 - 2260219
Intron Length:
1278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTTACT
Flanking Amino Acid:
RSQWIFESRKVSAQGSKASS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
66.2
0.59
1.9
85.58
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007701
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008005
2257438 - 2261558
4121