About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2260352_2260438_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2260352 - 2260438
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TGTAAATCAACT
Flanking Amino Acid:
ALFSFKVKWLAVVIMGVVLQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
62.4
0.31
1
64
32.1
Major PPT
68.5
0.42
0.9
60.7
40.3
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
48.6
-0
2
72.97
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007701
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008005
2257438 - 2261558
4121