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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2260568_2261525_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2260568 - 2261525
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTCCTGTGATA
Flanking Amino Acid:
SYLGKQFLRQTVAKDDQTAS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.7
-0.1
2
62.88
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007701
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008005
2257438 - 2261558
4121