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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2383691_2385062_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2383691 - 2385062
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TGTCTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGGACACTGACG
Flanking Amino Acid:
HDNVEKELFTEVDVIRSCQE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.8
43.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
72.6
0.51
1
65.2
41.1
Minor 5ss
34.6
-1.8
3.1
46.9
42.4
Minor BPS
44.2
-0.6
2
50.54
43.1

Associated Gene:

Gene:
TEKT3
Ensembl Gene ID:
ENSAPLG00000007251
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007539
2382481 - 2389024
6544