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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2386998_2387162_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2386998 - 2387162
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCTCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CACTTTTGAATT
Flanking Amino Acid:
KSKIQTHLAKTLQEIFQIEM
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.2
55.7
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
1
74.5
40
Minor 5ss
43.2
-0.8
3
57
47.2
Minor BPS
54.2
0.21
1.4
64.75
40.6

Associated Gene:

Gene:
TEKT3
Ensembl Gene ID:
ENSAPLG00000007251
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007539
2382481 - 2389024
6544