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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2397564_2406462_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2397564 - 2406462
Intron Length:
8899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AGCTTTCTATCT
Flanking Amino Acid:
IFQCLTSSTNEWLQSVQAMM
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.6
0.64
0.8
72.8
32.1
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
46.5
-0.1
1.9
62.98
41.5

Associated Gene:

Gene:
PMP22
Ensembl Gene ID:
ENSAPLG00000023975
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045442
2396071 - 2410086
14016