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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2413513_2414517_F

Intron Information:

Intron Rank:
145701
Intron Class:
major
Intron Phase:
Intron Coordinates:
2413513 - 2414517
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TGCTTCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTAACATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.9
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.7
0.6
0.9
74.1
35.7
Minor 5ss
34.4
-1.8
2.9
39.9
40.3
Minor BPS
61.1
0.43
1.7
74.97
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028518
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046422
2412771 - 2421049
8279