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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2416307_2419319_F

Intron Information:

Intron Rank:
145703
Intron Class:
major
Intron Phase:
Intron Coordinates:
2416307 - 2419319
Intron Length:
3013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCAAGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACCTCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
80
0.75
1
78.6
31
Major PPT
69
0.43
1
62.7
37.3
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
70.7
0.73
1.2
78.1
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028518
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046422
2412771 - 2421049
8279