About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2430279_2430560_F

Intron Information:

Intron Rank:
144917
Intron Class:
major
Intron Phase:
Intron Coordinates:
2430279 - 2430560
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
ATTTCCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
73
0.57
1.2
74
41.2
Major PPT
71.9
0.49
0.9
66
35.2
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
66.7
0.52
1.7
79.11
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028130
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025483
2429727 - 2434377
4651