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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2433642_2440622_F

Intron Information:

Intron Rank:
144916
Intron Class:
major
Intron Phase:
Intron Coordinates:
2433642 - 2440622
Intron Length:
6981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCAT
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATGGAT
U12 Branch Point Sequence:
GTCCCATGGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
66.7
40.4
Major BPS
51.3
0.03
1.4
52.7
43.2
Major PPT
85.7
0.8
0.7
77.7
31.1
Minor 5ss
34.2
-1.8
3.2
44.3
44.6
Minor BPS
44
-0.6
1.8
46.84
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028130
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022610
2433580 - 2440677
7098