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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2444909_2466532_F

Intron Information:

Intron Rank:
133230
Intron Class:
major
Intron Phase:
Intron Coordinates:
2444909 - 2466532
Intron Length:
21624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AACCCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.7
0.65
0.9
78.2
34.8
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
57.6
0.32
1.6
69.1
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021639
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040782
2444207 - 2594257
150051
ENSAPLT00000027169
2444207 - 2472926
28720