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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2466647_2467393_F

Intron Information:

Intron Rank:
133234
Intron Class:
major
Intron Phase:
Intron Coordinates:
2466647 - 2467393
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GGTTCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
74.5
0.55
1
69.5
40.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
80.3
0.95
1.1
81.07
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021639
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036184
2465751 - 2467573
1823