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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2466647_2472432_F

Intron Information:

Intron Rank:
133243
Intron Class:
major
Intron Phase:
Intron Coordinates:
2466647 - 2472432
Intron Length:
5786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
CTGCCCCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
82.4
0.73
0.8
81.2
36.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
47.6
-0.1
2
65.71
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021639
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047021
2465175 - 2472926
7752