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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2466647_2582664_F

Intron Information:

Intron Rank:
133238
Intron Class:
major
Intron Phase:
Intron Coordinates:
2466647 - 2582664
Intron Length:
116018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTACGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72
0.49
0.9
62.6
43.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
62.1
0.37
1.5
71.17
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021639
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040782
2444207 - 2594257
150051