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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2466647_2594065_F

Intron Information:

Intron Rank:
133235
Intron Class:
major
Intron Phase:
Intron Coordinates:
2466647 - 2594065
Intron Length:
127419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTGTCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.9
0.67
0.7
72.9
32
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
47.5
-0.2
2.4
69.92
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021639
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036437
2466427 - 2594257
127831