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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2477624_2539419_F

Intron Information:

Intron Rank:
140318
Intron Class:
major
Intron Phase:
Intron Coordinates:
2477624 - 2539419
Intron Length:
61796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTAAATCTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
48.2
-0.2
1.9
59.08
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025495
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018026
2476943 - 2540666
63724