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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_251828_257550_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
251828 - 257550
Intron Length:
5723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
AAGTCATCACCA
Flanking Amino Acid:
AVLYCFANGEVKAELQKQWS
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
45.7
-0.3
2
56.75
42

Associated Gene:

Gene:
GLP2R
Ensembl Gene ID:
ENSAPLG00000003827
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003954
251489 - 291388
39900