About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2530074_2533644_F

Intron Information:

Intron Rank:
125941
Intron Class:
major
Intron Phase:
Intron Coordinates:
2530074 - 2533644
Intron Length:
3571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.3
0.55
0.9
73
37.3
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017846
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023558
2529515 - 2533673
4159