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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2530074_2538132_F

Intron Information:

Intron Rank:
125942
Intron Class:
major
Intron Phase:
Intron Coordinates:
2530074 - 2538132
Intron Length:
8059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017846
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046153
2529515 - 2538582
9068