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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_261238_264446_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
261238 - 264446
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AATACCATAATC
Flanking Amino Acid:
QQMSFHDYKYRLARSTLVLI
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
85.2
0.79
0.9
90.8
21.8
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
59.7
0.29
1.6
68.3
36.5

Associated Gene:

Gene:
GLP2R
Ensembl Gene ID:
ENSAPLG00000003827
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003954
251489 - 291388
39900