Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2620150_2629267_R

Intron Information:

Intron Rank:

131084

Intron Class:

major

Intron Phase:

Intron Coordinates:

2620150 - 2629267

Intron Length:

9118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CCTCCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTGCAT

U12 Branch Point Sequence:

GGAGGAATAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.11

0.7

90.5

20.5

Major BPS

0.03

1.5

63.1

44.4

Major PPT

79.1

0.65

0.7

72.8

25.4

Minor 5ss

34.4

-1.8

3.3

48.7

47.5

Minor BPS

35.4

-1

2.2

48.57

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043845

2619095 - 2629569

10475