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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2629087_2629267_R

Intron Information:

Intron Rank:
131083
Intron Class:
major
Intron Phase:
Intron Coordinates:
2629087 - 2629267
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGGTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.6
0.96
0.7
88.6
28.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
59.1
0.36
1.6
70.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017739
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024948
2628397 - 2629569
1173