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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2633250_2634755_R

Intron Information:

Intron Rank:
140726
Intron Class:
major
Intron Phase:
Intron Coordinates:
2633250 - 2634755
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AAAATTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.9
0.65
0.9
74.8
35.7
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
61.7
0.35
1.2
63.35
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023055
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047584
2630909 - 2634842
3934
ENSAPLT00000044856
2633157 - 2635735
2579