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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2702465_2714650_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2702465 - 2714650
Intron Length:
12186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCCTTCTCT
Flanking Amino Acid:
WTAATGSLDAGALLLGGILY
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.2
0.54
0.9
67
33.9
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
50.3
0.09
3.6
91.83
37.8

Associated Gene:

Gene:
COX10
Ensembl Gene ID:
ENSAPLG00000019098
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021359
2700136 - 2803753
103618