About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_27112_27203_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27112 - 27203
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAGAA
U12 Branch Point Sequence:
CCTTCCTCACAG
Flanking Amino Acid:
KERYAAWMIYTYSGLFCVTV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.8
35.5
Major BPS
46.4
-0.2
1
38.4
32.3
Major PPT
77.3
0.62
0.7
71.3
26.8
Minor 5ss
38.4
-1.3
2.7
46.6
34.4
Minor BPS
46.8
-0.3
2
52.48
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025616
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035172
26675 - 30759
4085