Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2714884_2733421_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2714884 - 2733421

Intron Length:

18538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAG

U12 Branch Point Sequence:

CTGTGCTAAGCG

Flanking Amino Acid:

KNRPLVRGQISPLLAVCFAA

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

55.4

0.13

1.6

63.6

42.5

Major PPT

78.3

0.64

0.7

25.1

Minor 5ss

34.4

-1.8

3.4

46.7

48.6

Minor BPS

43.5

-0.6

2.3

50.45

49.5

Associated Gene:

Gene:

COX10

Ensembl Gene ID:

ENSAPLG00000019098

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021359

2700136 - 2803753

103618