Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2789466_2798510_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2789466 - 2798510

Intron Length:

9045

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTACTG

5'SS Class:

major

3'SS Sequence:

TCTTGTGTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

ATTCCCTGACCT

Flanking Amino Acid:

LARLSKIKLTALVVCTASAG

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

59.4

45.2

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

0.72

0.9

76.3

37.7

Minor 5ss

34.6

-1.8

3.4

48.1

47.4

Minor BPS

61.4

0.44

1.8

81.25

39.8

Associated Gene:

Gene:

COX10

Ensembl Gene ID:

ENSAPLG00000019098

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021359

2700136 - 2803753

103618