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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2799771_2800373_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2799771 - 2800373
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTCTTTTAATA
Flanking Amino Acid:
RRCSPPRALAGLFIWHLKKT
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
83
0.74
0.8
81.2
29.3
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
74.7
0.77
1.1
80
29.3

Associated Gene:

Gene:
COX10
Ensembl Gene ID:
ENSAPLG00000019098
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021359
2700136 - 2803753
103618