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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2801721_2803649_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2801721 - 2803649
Intron Length:
1929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATGTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
65.1
41.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
49.7
-0
2.5
66.5
44.9
Minor BPS
49.4
0.04
2
69.05
42.4

Associated Gene:

Gene:
COX10
Ensembl Gene ID:
ENSAPLG00000019098
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021359
2700136 - 2803753
103618