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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2819500_2819997_R

Intron Information:

Intron Rank:
135061
Intron Class:
major
Intron Phase:
Intron Coordinates:
2819500 - 2819997
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCAGGACA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCAAA
U12 Branch Point Sequence:
TGCCCCCAAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.4
63.2
42.9
Major BPS
45.1
-0.3
1.2
48.3
32.9
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
27.5
-2.6
2.8
24.7
36.3
Minor BPS
42.9
-0.5
2.2
54.12
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020040
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028887
2818671 - 2825154
6484