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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2822769_2825000_R

Intron Information:

Intron Rank:
135063
Intron Class:
major
Intron Phase:
Intron Coordinates:
2822769 - 2825000
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCACAT
5'SS Class:
major
3'SS Sequence:
GTATACCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGACTCCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
62.5
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
62.3
0.28
1
54.8
40.1
Minor 5ss
37.8
-1.4
3.5
56
48.1
Minor BPS
56.7
0.21
1.7
67.45
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020040
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028887
2818671 - 2825154
6484