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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_284467_286580_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
284467 - 286580
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
TTCTTGGTATTT
Flanking Amino Acid:
KMLQESTVDAGIHCNGTFDQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
41.7
-0.5
2.6
66.23
45.5

Associated Gene:

Gene:
GLP2R
Ensembl Gene ID:
ENSAPLG00000003827
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003954
251489 - 291388
39900