About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_286675_291217_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
286675 - 291217
Intron Length:
4543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTCCTCATGC
Flanking Amino Acid:
SVMILFLVKQAKASLLEKTT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82
0.72
0.8
76.6
30.9
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
55.7
0.16
2.1
74.6
42.2

Associated Gene:

Gene:
GLP2R
Ensembl Gene ID:
ENSAPLG00000003827
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003954
251489 - 291388
39900