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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2927506_2951444_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2927506 - 2951444
Intron Length:
23939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
CCCCCTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAG
U12 Branch Point Sequence:
TCAGCCCTAACG
Flanking Amino Acid:
RNYERGLAWYRDLMPRTLEG
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
55.9
0.15
1.5
67
39.8
Major PPT
74.5
0.55
0.7
71.6
26.4
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
54.8
0.01
1.9
60.86
46.5

Associated Gene:

Gene:
HS3ST3A1
Ensembl Gene ID:
ENSAPLG00000023208
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004440
2926919 - 2952063
25145