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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_296613_298300_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
296613 - 298300
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
YSCEEIINGEGEKCRSFVSL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
GSG1L2
Ensembl Gene ID:
ENSAPLG00000004526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004639
295887 - 315209
19323