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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3033807_3035027_R

Intron Information:

Intron Rank:
137107
Intron Class:
major
Intron Phase:
Intron Coordinates:
3033807 - 3035027
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021261
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029166
3033761 - 3043316
9556