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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3035151_3043116_R

Intron Information:

Intron Rank:
137108
Intron Class:
major
Intron Phase:
Intron Coordinates:
3035151 - 3043116
Intron Length:
7966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TTCTGGGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTTTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.7
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.2
0.57
1
67.8
42.5
Minor 5ss
37.9
-1.4
3
43.9
45.7
Minor BPS
54.4
0.12
1.7
66
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021261
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029166
3033761 - 3043316
9556