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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3132148_3133110_R

Intron Information:

Intron Rank:
144897
Intron Class:
major
Intron Phase:
Intron Coordinates:
3132148 - 3133110
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTC
5'SS Class:
major
3'SS Sequence:
ATTTTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AGTTTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.8
43.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.1
0.74
0.9
74.1
41
Minor 5ss
34.3
-1.8
3.6
50.7
45.9
Minor BPS
62.9
0.48
1.6
79.48
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025343
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024599
3122373 - 3133498
11126