Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3141908_3144673_F

Intron Information:

Intron Rank:

146200

Intron Class:

major

Intron Phase:

Intron Coordinates:

3141908 - 3144673

Intron Length:

2766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCACTGTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTATATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.4

33.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.7

0.44

60.8

39.9

Minor 5ss

42.4

-0.8

2.8

51.5

44.9

Minor BPS

49.8

-0

1.9

66.18

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040128

3140661 - 3145152

4492

ENSAPLT00000033485

3141766 - 3146445

4680