About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3167573_3167871_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3167573 - 3167871
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCAAT
U12 Branch Point Sequence:
CTCCCTGCAGCA
Flanking Amino Acid:
GRGWREGEAAALLLLYDITS
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
51.7
0.04
1.2
60.3
34.2
Major PPT
82
0.72
0.7
73
31.9
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
39
-0.8
2.2
48.34
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019424
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045449
3166453 - 3169137
2685
ENSAPLT00000031533
3166453 - 3169312
2860