Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3169134_3169206_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3169134 - 3169206

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTGCCACCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTAAC

U12 Branch Point Sequence:

GGCCCTGCCACC

Flanking Amino Acid:

NVELAFLAIAKELKQRALQP

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

73.9

29.7

Major BPS

46.7

-0.2

1.4

47.1

44.6

Major PPT

0.34

0.9

54.8

35.4

Minor 5ss

29.2

-2.4

3.1

32.8

35.7

Minor BPS

35.9

-1.1

2.2

41.15

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031533

3166453 - 3169312

2860