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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3184728_3184817_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3184728 - 3184817
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGTAA
5'SS Class:
major
3'SS Sequence:
CTGCGTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTC
Flanking Amino Acid:
CMFKKLHFKEVAVNSVFREV
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
69.7
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.7
0.4
1
57.5
43.2
Minor 5ss
36.7
-1.5
3.2
45.7
49.5
Minor BPS
60.4
0.31
1.6
68.82
37.9

Associated Gene:

Gene:
NAT9
Ensembl Gene ID:
ENSAPLG00000004540
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004664
3184157 - 3187550
3394