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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3185156_3185385_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3185156 - 3185385
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
GGGCGCTGATTT
Flanking Amino Acid:
TLGEIEIMIAEPSYRGRGFG
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
83.6
0.75
0.7
80.6
24.7
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
40.8
-0.6
2
51.91
42.5

Associated Gene:

Gene:
NAT9
Ensembl Gene ID:
ENSAPLG00000004540
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004664
3184157 - 3187550
3394