About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3185527_3186629_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3185527 - 3186629
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
CTGTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
CTGTTCTCCACA
Flanking Amino Acid:
MQRSWREDADKCTFIVLDTE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1
61.4
37.6
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
77.9
0.63
0.8
72.4
32.4
Minor 5ss
30.5
-2.2
3.7
46.3
43.5
Minor BPS
48.9
-0
2
62.55
44.1

Associated Gene:

Gene:
NAT9
Ensembl Gene ID:
ENSAPLG00000004540
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004664
3184157 - 3187550
3394