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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_3198157_3198561_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3198157 - 3198561
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATT
Flanking Amino Acid:
RAETRPILSVQRRGSPNIFE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
77.9
36.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.7
0.76
0.8
77.6
35.3
Minor 5ss
41.8
-0.9
2.8
55.5
35.9
Minor BPS
64.6
0.54
1.5
79.17
37.8

Associated Gene:

Gene:
TMEM104
Ensembl Gene ID:
ENSAPLG00000004556
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004684
3192551 - 3229201
36651